[BioRuby] Google Summer of Code project ideas

[Raoul Bonnal]

What you mean ?

I would add "Extract BioSQL form BioRuby and create a biogem plug-in,
updating the library where needed."

Is there more time to add this project?


On 03/03/12 02.14, "Mic" <mictadlo at gmail.com> wrote:

> Howabout to include:
> * Bedtools
> * tabix
> 
> 
> On Sat, Mar 3, 2012 at 12:04 AM, Peter Cock <p.j.a.cock at googlemail.com>wrote:
> 
>> On 10 Feb, Robert Buels wrote (posted by Chris Field):
>>> Hi all,
>>> 
>>> I'm going to be OBF project admin again this year for Google Summer of
>>> code.  OBF's application is due in a couple of weeks, and we need to
>> update
>>> our project ideas on the OBF wiki page and on each project's individual
>> wiki
>>> pages.
>>> 
>>> So, for each of the OBF projects that wants to do GSoC again this year,
>>> please:
>>> 
>>> a.) Update the list of project ideas on your project's GSoC page
>>> (BioPython, BioPerl, BioRuby, etc).  Add new ones, remove ones that have
>>> already been done or no longer relevant, etc.
>>> 
>>> b.) Update the list of project ideas on the main OBF GSoC page
>>> (http://www.open-bio.org/wiki/Google_Summer_of_Code) to match.
>>> 
>>> c.) Let me know via email that you have done so and it's ready for Google
>>> to peruse.
>>> 
>>> Please have the updates done, if possible, by this Friday (March 11). The
>>> number and quality of the project ideas are part of the evaluation
>> process
>>> for whether OBF is accepted as a Summer of Code organization again this
>>> year, so let's come up with some good ones.  :-)
>>> 
>>> Rob
>>> 
>>> ----
>>> Robert Buels
>> 
>> Hi BioRuby folk,
>> 
>> You seem to have been the most organized Bio* project for GSoC so far, and
>> have
>> put together good set of GSoC project ideas by Rob's target date. Well
>> done :)
>> 
>> Is the list here complete now?
>> http://bioruby.open-bio.org/wiki/Google_Summer_of_Code
>> 
>>    3.1.1 Write the world's fastest parallelized GFF3/GTF parser in D,
>> for Ruby FFI
>>    3.1.2 Extend bio-alignment plug-in with Multiple Alignment Format
>> -MAF- parser (FFI?)
>>    3.1.3 Testing framework for biogem plugins
>>    3.1.4 Adding social networking functionality to BioRuby.org
>>    3.1.5 Update bio-images a plugin to represent bio-object with cool
>> images
>>    3.1.6 Update to the Ruby Ensembl API
>> 
>> I noticed "Testing framework for biogem plugins" was missing on the OBF
>> summary page, so I added it:
>> http://www.open-bio.org/wiki/Google_Summer_of_Code
>> 
>> Regards,
>> 
>> Peter
>> 
>> _______________________________________________
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>> BioRuby at lists.open-bio.org
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>> 
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