[BioRuby] [GSoC] weekly report #10

[Artem Tarasov]

Hi all,

During the past week I've added filtering functionality to sambamba-view
utility. Now the tool parses expressions like "mapping_quality >= 50 and
[MQ] >=50 and not ([RG] =~ /abcd/i or [RG] == null)", superseding the
functionality given by samtools flags -f, -F, -q, -l, -r.

Also I'm now introducing wget-like text progressbars to my tools, as of now
this is presented in sambamba-index only.

More on that is at
http://lomereiter.wordpress.com/2012/07/24/gsoc-weekly-report-10/