[BioRuby] Failure: test_output_fasta(Bio::FuncTestSequenceOutputEMBL)

[Peter Cock]

On Fri, Nov 25, 2011 at 2:32 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Hello all,
>
> There seems to have been a new test failure or regression in Linux 64 Ruby 1.9,
>
> Revision 48bd150a6180d59879872bd85dd95c7ddf1a19c0 passed,
> http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/22/steps/test/logs/stdio
> commit 48bd150a6180d59879872bd85dd95c7ddf1a19c0
> Author: Naohisa Goto <ng at bioruby.org>
> Date:   Tue Nov 22 17:32:23 2011 +0900
> Test bug fix: fixed incomplete Windows platform detection.
> https://github.com/bioruby/bioruby/commit/48bd150a6180d59879872bd85dd95c7ddf1a19c0
>
> Revision 688779e71a27e861fb01e07f816384561b8cfe45 failed,
> http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/23/steps/test/logs/stdio
> commit 688779e71a27e861fb01e07f816384561b8cfe45
> Author: Naohisa Goto <ng at bioruby.org>
> Date:   Thu Nov 24 11:49:30 2011 +0900
> Rakefile: new tasks: test-all to run all tests, etc.
> https://github.com/bioruby/bioruby/commit/688779e71a27e861fb01e07f816384561b8cfe45
>
>  1) Failure:
> test_output_fasta(Bio::FuncTestSequenceOutputEMBL)
> [/home/buildslave/BuildBot_BioRuby/lin1964/build/test/functional/bio/sequence/test_output_embl.rb:47]:
> Exception raised:
> <#<ArgumentError: wrong number of arguments (1 for 0)>>.
>
> I hope that helps and that someone can reproduce the failure locally.
> If need be I can try to bisect the failure here.

This issue doesn't happen on two other Ruby 1.9.3 machines
(under Windows XP 32 bit, and a 32 bit Linux Machine).

Can anyone else reproduce this, or might it be a problem
specific to my 64 bit Linux machine?

Peter