[BioRuby] MAF UCSC and intervals

[Raoul Bonnal]

Dear all, 
Can we parse a .MAF file and extract a spliced alignment like
http://biopython.org/wiki/Multiple_Alignment_Format#Retrieving_a_pre-spliced
_alignment_over_a_given_set_of_exons ?

Why this  ? I¹m looking for new coding transcripts and I want to use
https://github.com/mlin/PhyloCSF/wiki but I must recreate a specific
alignment for every new transcript I identified with cufflinks.

  
--
Ra