[BioRuby] BioRuby 1.4.3 released

[George Githinji]

Hi
Thank you for all the bug fixes and the hard work.

On Tue, Aug 21, 2012 at 7:37 PM, Naohisa GOTO
<ngoto at gen-info.osaka-u.ac.jp> wrote:
> Hi, all,
>
> We are pleased to announce the release of BioRuby 1.4.3.
> This new release fixes bugs existed in 1.4.2 and improves
> portability on JRuby and Rubinius.
>
> Tar.gz file: http://bioruby.org/archive/bioruby-1.4.3.tar.gz
> Gem file:  http://bioruby.org/archive/gems/bio-1.4.3.gem
>
> We also put RubyGems pacakge at RubyGems.org and RubyForge (*).
> (* Files on RubyForge will soon be available.)
>
> You can easily install by using RubyGems. First, check the
> version number by using search command:
>  % gem search --remote bio
> and find “bio (1.4.3)” in the list. Then,
>  % sudo gem install bio
>
> Here is a brief summary of changes.
>
> * Bio::KEGG::KGML bug fixes and new class Bio::KEGG::KGML::Graphics
>   for storing a graphics element.
> * Many failures and errors running on JRuby and Rubinius are resolved.
> * Strange behavior related with “circular require” is fixed.
> * Fixed: Genomenet remote BLAST does not work.
> * Fixed: Bio::NucleicAcid.to_re(“s”) typo.
> * Fixed: Bio::EMBL#os raises RuntimeError.
> * Fixed: bin/bioruby: Failed to save object with error message
>   "can’t convert Symbol into String" on Ruby 1.9.
>
> In addition, many changes have been made, including incompatible
> changes. For more information, see RELEASE_NOTES.rdoc and
> ChangeLog.
>
> Acknowledgments: Thanks to all persons reporting issues and/or
> submitting patches.
>
> Hope you enjoy.
>
> P.S. We are having trouble when updating http://bioruby.org/
> and http://bioruby.open-bio.org/ webpages now, possibly because
> of file/directory permissions in open-bio.org server.
>
> --
> Naohisa Goto
> ng at bioruby.org / ngoto at gen-info.osaka-u.ac.jp
> _______________________________________________
> BioRuby Project - http://www.bioruby.org/
> BioRuby mailing list
> BioRuby at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioruby



-- 
---------------
Sincerely
George
Skype: george_g2
Blog: http://biorelated.wordpress.com/
Twitter: http://twitter.com/#!/george_l