[BioRuby] GSoC final report

[Pjotr Prins]

Thank you Artem,

Great job.

Pj.

On Mon, Aug 20, 2012 at 01:47:18PM +0400, Artem Tarasov wrote:
> Hi all,
> 
> here's a wrap-up of what was added/fixed in sambamba and Ruby bindings
> during the last couple of weeks:
> http://lomereiter.wordpress.com/2012/08/20/gsoc-weekly-report-12/
> 
> * Tools don't require input files to be seekable anymore, allowing to work
> with e.g. /dev/stdin and /dev/stdout
> * I've added an option of MessagePack output, that drastically improved
> speed of bindings (2-4x speedup depending on configuration)
> * The gem is on Travis CI now, passing tests on MRI 1.9.2/1.9.3. (JRuby
> also works, but on Travis there're problems with popen, same as with
> BioRuby)
> * The tool 'sambamba_filter' is now available on Galaxy Tool Shed.
> 
> 
> It's been a great summer. Thank you OBF/BioRuby folks :)
> 
> 
> --
> Artem
> _______________________________________________
> BioRuby Project - http://www.bioruby.org/
> BioRuby mailing list
> BioRuby at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioruby
>