[BioRuby] New biogems for ipcress, krona and small kmer counting
Ben Woodcroft
donttrustben at gmail.com
Wed Aug 8 07:23:21 UTC 2012
More adverts..
bio-ipcress is a programmatic interface to exonerate's ipcress, an
in-silico PCR system.
https://github.com/wwood/bioruby-ipcress
bio-krona is a programmatic interface to Krona, a HTML visualisation tool
for hierarchical data.
https://github.com/wwood/bioruby-krona
bio-kmer_counter is a pure ruby gem for counting small kmers (e.g. 4mers)
within sequences, for fingerprinting purposes e.g. the binning of
metagenomic data.
https://github.com/wwood/bioruby-kmer_counter
Enjoy,
ben
--
--
Ben Woodcroft
http://ecogenomic.org/users/ben-woodcroft <http://www.ecogenomic.org/>
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