[BioRuby] Failure: test_output_fasta(Bio::FuncTestSequenceOutputEMBL)

[Peter Cock]

On Mon, Feb 27, 2012 at 12:41 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Fri, Nov 25, 2011 at 2:32 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>> Hello all,
>>
>> There seems to have been a new test failure or regression in Linux 64 Ruby 1.9,
>>
>> Revision 48bd150a6180d59879872bd85dd95c7ddf1a19c0 passed,
>> http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/22/steps/test/logs/stdio
>> commit 48bd150a6180d59879872bd85dd95c7ddf1a19c0
>> Author: Naohisa Goto <ng at bioruby.org>
>> Date:   Tue Nov 22 17:32:23 2011 +0900
>> Test bug fix: fixed incomplete Windows platform detection.
>> https://github.com/bioruby/bioruby/commit/48bd150a6180d59879872bd85dd95c7ddf1a19c0
>>
>> Revision 688779e71a27e861fb01e07f816384561b8cfe45 failed,
>> http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/23/steps/test/logs/stdio
>> commit 688779e71a27e861fb01e07f816384561b8cfe45
>> Author: Naohisa Goto <ng at bioruby.org>
>> Date:   Thu Nov 24 11:49:30 2011 +0900
>> Rakefile: new tasks: test-all to run all tests, etc.
>> https://github.com/bioruby/bioruby/commit/688779e71a27e861fb01e07f816384561b8cfe45
>>
>>  1) Failure:
>> test_output_fasta(Bio::FuncTestSequenceOutputEMBL)
>> [/home/buildslave/BuildBot_BioRuby/lin1964/build/test/functional/bio/sequence/test_output_embl.rb:47]:
>> Exception raised:
>> <#<ArgumentError: wrong number of arguments (1 for 0)>>.
>>
>> I hope that helps and that someone can reproduce the failure locally.
>> If need be I can try to bisect the failure here.
>
> This issue doesn't happen on two other Ruby 1.9.3 machines
> (under Windows XP 32 bit, and a 32 bit Linux Machine).
>
> Can anyone else reproduce this, or might it be a problem
> specific to my 64 bit Linux machine?
>
> Peter

This is still continuing to fail on the nightly tests. If no one else
can reproduce it, do you have any suggestions for how I can
help you identify the problem?

Regards,

Peter