[BioRuby] Workflows and Parallelization
Raoul Bonnal
bonnalraoul at ingm.it
Wed Feb 9 11:58:50 UTC 2011
Hello folks,
tweeting around I found these videos
http://www.youtube.com/watch?v=1ntxT-47VPA
http://www.youtube.com/watch?v=OpaiGYxkSuQ&feature=related
http://www.youtube.com/watch?v=P40akGWJ_gY&feature=related
Project home page:
http://www.gnu.org/software/parallel/
Very useful in many contexts.
@BioRuby: I think that we can explore how to use it in workflows.
On 08/feb/2011, at 02.06, MISHIMA, Hiroyuki wrote:
> Hi,
>
> I added Pjotr's information on the BioRuby wiki
> ( http://bioruby.open-bio.org/wiki/Workflows ).
>
> I also updated a subsection about GridEngine. Univa took over GridEngine
> development from Oracle.
>
> Sincerely yours,
> Hiro.
>
> Pjotr Prins wrote (2011/02/08 2:16):
>> rq - which can parallelize calculations with zero-administration
>> (all that is needed is a shared dir).
>
> --
> MISHIMA, Hiroyuki, DDS, Ph.D.
> COE Research Fellow
> Department of Human Genetics
> Nagasaki University Graduate School of Biomedical Sciences
> _______________________________________________
> BioRuby Project - http://www.bioruby.org/
> BioRuby mailing list
> BioRuby at lists.open-bio.org
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--
Ra
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