[BioRuby] fastq files reading
xyz
mitlox at op.pl
Sat May 29 12:14:04 UTC 2010
Hello,
I would like to read at the same time two fastq files in order to
save them to fasta file.
require 'bio'
Bio::FlatFile.open(Bio::Fastq, 'readsA.fastq') do |ff1|
ff1.each do |entry1|
header1 = entry1.entry_id
seq1 = entry1.seq
puts seq1.to_fasta(header1 + "qwa")
#header2 = entry2.entry_id
#seq2 = entry2.seq
#puts seq2.to_fasta(header2 + "qwa")
end
end
I have already the following code, but unfortunately I do not know
how to read both files at the same time.
How is it possible to read two files at the same time and write them
to fasta file?
Thank you in advance.
Best regards,
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