[BioRuby] HMMER 3 parsers?

[Daniel Lundin]

Naohisa GOTO skrev:
> Hi,
> 
> Christian Zmasek are now working for the HMMER 3 support.
> It will be great if you can help us.
> 
Certainly. Since my alternative is writing a parser for myself, I might 
as well put in my effort for the common good.

Christian, is there anything in particular I could help with? I have 
started collecting some test cases for my own needs.

/Daniel

> http://github.com/cmzmasek/bioruby/blob/master/lib/bio/appl/hmmer/hmmer3report.rb
> http://github.com/cmzmasek/bioruby/blob/master/lib/bio/appl/hmmer3.rb
> 
> Naohisa Goto
> ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
> 
> On Tue, 09 Mar 2010 20:48:11 +0100
> Daniel Lundin <daniel.lundin at molbio.su.se> wrote:
> 
>> Hi,
>>
>> HMMER 3 is currently available as a first release candidate. With it 
>> comes several news both in the form of new tools and new kinds of data, 
>> which means output formats are changed. Is anybody working on BioRuby 
>> parsers for these?
>>
>> /D
>>
>> -- 
>> Daniel Lundin
>>
>> Department of Molecular Biology & Functional Genomics
>> Arrhenius Laboratories for Natural Sciences
>> Stockholm University, SE-106 91 Stockholm, Sweden
>>
>> tel. +46 (0)8 16 41 95, mobile: +46 (0)708 123 922, fax. +46 (0)8 16 64 88
>>
>> Email: daniel.lundin at molbio.su.se
>> _______________________________________________
>> BioRuby Project - http://www.bioruby.org/
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>> BioRuby at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioruby
> 


-- 
Daniel Lundin

Department of Molecular Biology & Functional Genomics
Arrhenius Laboratories for Natural Sciences
Stockholm University, SE-106 91 Stockholm, Sweden

tel. +46 (0)8 16 41 95, mobile: +46 (0)708 123 922, fax. +46 (0)8 16 64 88

Email: daniel.lundin at molbio.su.se