[BioRuby] Bio Assembly Plugin

[Chase Miller]

Hi Francesco

Currently, Bio::Assembly only has an ace parser, but I it should be
straightforward to add a CAF ( or whatever ) parser.  Take a look at the
code (https://github.com/chmille4/bioruby) and let me know if you have any
questions.

I'm in the process of turning this into a plugin. I was thinking of turning
it into a standalone ace parser plugin, but maybe it makes more sense to
keep it as a bio-assembly plugin, especially if we can add another parser :)
.

Chase



On Mon, Dec 27, 2010 at 6:54 AM, Francesco Strozzi <
francesco.strozzi at gmail.com> wrote:

> Thanks! I will have a look.
>
>
> On Mon, Dec 27, 2010 at 12:39, Naohisa GOTO <ngoto at gen-info.osaka-u.ac.jp
> >wrote:
>
> > Hi,
> >
> > http://github.com/chmille4/bioruby
> >
> > http://lists.open-bio.org/pipermail/bioruby/2010-September/001480.html
> >
> > On Mon, 27 Dec 2010 12:25:26 +0100
> > Francesco Strozzi <francesco.strozzi at gmail.com> wrote:
> >
> > > Hi Bioruby coders,
> > >
> > > I want to start a Bioruby Assembly Plugin, where I'd like to put
> parsers
> > for
> > > common used formats like ACE, CAF and maybe MAF that is used by the
> Mira
> > > assembler. For what I have seen the Bioruby Core does not provide this
> > type
> > > of parsers yet. If someone else is doing something similar please let
> me
> > > know, so we can avoid duplicate the same code...
> > >
> > > Cheers
> > >
> > > --
> > >
> > > Francesco
> > > _______________________________________________
> > > BioRuby Project - http://www.bioruby.org/
> > > BioRuby mailing list
> > > BioRuby at lists.open-bio.org
> > > http://lists.open-bio.org/mailman/listinfo/bioruby
> >
> > Naohisa Goto
> > ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
> >
>
>
>
> --
>
> Francesco
> _______________________________________________
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> BioRuby at lists.open-bio.org
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>