[BioRuby] Alignment plugin

[Pjotr Prins]

Jan, I notice you have the Range concept in Bio::Graphics, e.g.

  http://bio-graphics.rubyforge.org/classes/Bio/Feature.html

You introduce names for identifying features. I am thinking of real
objects.

Pj.

On Mon, Apr 26, 2010 at 04:15:59PM +0100, Jan Aerts wrote:
> True. Also keep in the back of your head that one of the GSoC projects this
> year (hopfully) will focus on adding annotation functionality to bioruby
> using RDF. So any object can have arbitrary annotations (although we might
> decide to use a standardized vocabulary).
> 
> jan.
> 
> On 26 April 2010 16:04, Pjotr Prins <pjotr.public14 at thebird.nl> wrote:
> 
> > Maybe we should start defining a basic sequence object. What would we
> > want from it, what should be core and what should be mixed in?
> >
> > Alignments and secondary structures should build on that.
> >
> > I think we have a chance of doing it right - after all our
> > experience, and that of the other Bio* projects.
> >
> > Pj.
> > _______________________________________________
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> >