[BioRuby] BioRuby 1.3.1 is released
Naohisa GOTO
ngoto at gen-info.osaka-u.ac.jp
Wed Sep 2 13:15:46 UTC 2009
Hi all,
We are pleased to announce the release of BioRuby 1.3.1.
The archive is available at:
http://bioruby.org/archive/bioruby-1.3.1.tar.gz
Web page:
http://bioruby.org/
http://bioruby.open-bio.org/
API documentation:
http://bioruby.org/rdoc/
Bug report:
http://rubyforge.org/projects/bioruby/
We also put RubyGems pacakge at RubyForge as always.
You can easily install by using RubyGems.
% sudo gem install bio
You can also obtain bioruby gem file from bioruby.org.
http://bioruby.org/archive/gems/bio-1.3.1.gem
Here is a brief summary of changes.
* Refactoring of BioSQL support.
* Bio::PubMed bug fixes.
* Bio::NCBI::REST bug fixes.
* Bio::GCG::Msf bug fixes.
* Bio::Fasta::Report bug fixes and added support for multiple query
sequences.
* Bio::Sim4::Report bug fixes.
* Added unit tests for Bio::GCG::Msf and Bio::Sim4::Report.
* License of BioRuby is clarified.
In addition, many changes have been made, mainly bug fixes.
For more information, you can see ChangeLog at
http://github.com/bioruby/bioruby/blob/e731c6e52bc9a672e4546eeca4f2d2d968bdba09/ChangeLog
Hope you enjoy.
P.S.
In the next major release (maybe 1.4.0), PhyloXML, Chromatogram, and
many other new functions developed in GitHub will be merged.
Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
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