[BioRuby] Bio::DB::Sam

Jan Aerts jan.aerts at gmail.com
Thu Nov 26 13:52:16 UTC 2009


And another parser that probably should be added to bioruby: something
to interact with SAM/BAM files (which contain mapping positions for
short reads). More info at samtools.sourceforge.net

Lincoln has written a nice API for perl: Bio::DB::Sam. Maybe we should
go for something similar?
http://search.cpan.org/~lds/Bio-SamTools-1.07/lib/Bio/DB/Sam.pm

Is anyone already working on this?
jan.



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