[BioRuby] BioRuby 1.3.0 is released

[Jan Aerts]

Congratulations! Thanks Goto-san and others for all the effort you've put
in!

jan.

2009/2/24 Naohisa Goto <ngoto at gen-info.osaka-u.ac.jp>

> Hi all,
>
> We are pleased to announce the release of BioRuby 1.3.0.
>
> The archive is available at:
>  http://bioruby.org/archive/bioruby-1.3.0.tar.gz
>
> Web page:
>  http://bioruby.org/
>  http://bioruby.open-bio.org/
> API documentation:
>  http://bioruby.org/rdoc/
> Bug report:
>  http://rubyforge.org/projects/bioruby/
>
> (Updating of http://bioruby.rubyforge.org/ is still
> in progress. Please wait for a moment.)
>
> We also put RubyGems pacakge at RubyForge as always.
> You can easily install by using RubyGems.
>  % sudo gem install bio
>
> You can also obtain bioruby gem file from bioruby.org.
>  http://bioruby.org/archive/gems/bio-1.3.0.gem
>
> Here is a brief summary of changes.
>
>  * Support for GenBank/EMBL formatted sequence output with
>    improvements of Bio::Sequence.
>  * BioSQL support is completely rewritten by using ActiveRecord.
>  * Bio::Blast bug fixes and improvements.
>  * Bio::GFF::GFF2 and Bio::GFF::GFF3 improvements.
>  * Bio::Locations improvements.
>  * New classes and modules.
>    * Bio::Hinv
>    * Bio::NCBI::REST
>    * Bio::PAML::Codeml
>    * Bio::TogoWS::REST
>
> In addition, many changes have been made, including incompatible changes.
> For more information, you can see summary of changes at
>
> http://github.com/bioruby/bioruby/blob/e04da7a1e709195d0b3e957491e76e50af32e96d/doc/Changes-1.3.rdoc
>
> and ChangeLog at
>
>
> http://github.com/ngoto/bioruby/blob/27a31e1fa7e916ee2af09eeba992eea5a3ca6fbd/ChangeLog
>
> In ChangeLog, the release date is described as 20 Feb 2009, which
> indicates frozen date of the archive. I'm sorry I took much time
> for the final check of the archive contents.
>
> Hope you enjoy.
>
>
> Naohisa Goto
> ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
>
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>