[BioRuby] Batch Entrez search

John O. Woods john.woods at marcottelab.org
Sat Aug 22 00:04:03 UTC 2009


Right now I'm doing, one at a time: n.search("gene", "FBgn0041721")I'm
trying to get the gene ID corresponding to a Flybase gene ID.

This takes forever, since you can only do one every three seconds.

Also, sometimes it returns two items, and one might be deprecated--but
there's no way to tell.

Is there a way to batch search with BioRuby for a whole bunch of Flybase
IDs?

Many thanks,
John

Marcotte Lab | The University of Texas at Austin



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