[BioRuby] Bio::Blat::Report

[Davide Rambaldi]

>
> Could you please try again with new version?
	
> I've just fixed them in git repository.
> http://github.com/bioruby/bioruby/commit/ 
> 3ff940988b76bdff75679cdf0af4c836f76fa3a1
> http://github.com/bioruby/bioruby/commit/ 
> 1440b766202a2b66ac7386b9b46928834a9c9873
>

It's ok now. Thanks

I still have 3 errors in testing the last version (just to report it...)

  1) Failure:
test_gff_exportview(Bio::FuncTestEnsemblHuman) [./test/functional/bio/ 
io/test_ensembl.rb:95]:
<"4\tEnsembl\tGene\t1148366\t1151952\t.\t+\t1 
\tgene_id=ENSG00000206158; transcript_id=ENST00000382964;  
exon_id=ENSE00001494097; gene_type=KNOWN_protein_coding\n"> expected  
but was
<"">.

   2) Failure:
test_gff_exportview_with_named_args(Bio::FuncTestEnsemblHuman) [./ 
test/functional/bio/io/test_ensembl.rb:121]:
<"4\tEnsembl\tGene\t1148366\t1151952\t.\t+\t1 
\tgene_id=ENSG00000206158; transcript_id=ENST00000382964;  
exon_id=ENSE00001494097; gene_type=KNOWN_protein_coding\n"> expected  
but was
<"">.

   3) Failure:
test_tab_exportview_with_named_args(Bio::FuncTestEnsemblHuman) [./ 
test/functional/bio/io/test_ensembl.rb:180]:
<"seqname\tsource\tfeature\tstart\tend\tscore\tstrand\tframe\tgene_id 
\ttranscript_id\texon_id\tgene_type\n4\tEnsembl\tGene\t1148366 
\t1151952\t.\t+\t1\tENSG00000206158\tENST00000382964\tENSE00001494097 
\tKNOWN_protein_coding\n"> expected but was
<"seqname\tsource\tfeature\tstart\tend\tscore\tstrand\tframe\tgene_id 
\ttranscript_id\texon_id\tgene_type\n">.


Thanks again

>
> Naohisa Goto
> ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
> _______________________________________________
> BioRuby mailing list
> BioRuby at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioruby

Davide Rambaldi,
Bioinformatics PhD student.
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Bioinformatic Group IFOM-IEO Campus
Via Adamello 16, Milano
I-20139 Italy

[t] +39 02574303 066
[e] davide.rambaldi at ifom-ieo-campus.it
[i] http://ciccarelli.group.ifom-ieo-campus.it/fcwiki/DavideRambaldi  
(homepage)
[i] http://www.semm.it             (PhD school)
[i] http://www.btbs.unimib.it/     (Master)

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