[BioRuby] trace files (scf/abi) and ruby/bioruby

[Naohisa GOTO]

Hi,

For ABI traces, as far as I know, some person made previously, 
but all codes are lost now.

http://open-bio.org/pipermail/bioruby/2005-September/000128.html
but I cannot access to the URL described in the above archive.

I don't remember why it wasn't included in bioruby, but,
the thread of ML archive suggests that no one made any efforts
to change the code adopting the development guideline.

As Jan says, looking at bioperl, biopython, biojava, Staden, etc.
and to write your own code seems good.

Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org

On Thu, 2 Oct 2008 19:04:45 +0100
"Jan Aerts" <jan.aerts at gmail.com> wrote:

> If there's nothing there yet, you might have a look at the bioperl version
> and take that as a guide.
> 
> jan.
> 
> 2008/10/2 Anthony Underwood <email2ants at gmail.com>
> 
> > Hi all,
> >
> > Does anybody know if there is or someone is working on a ruby module for
> > reading abi/scf trace files. I was thinking of perhaps having a go at this
> > but thought I would check that there is no work in progress that I should
> > know about. I have done a few Google searches but come up with nothing so
> > thought I would ask on this list as well.
> >
> > Many thanks
> >
> > Anthony
> > _______________________________________________
> > BioRuby mailing list
> > BioRuby at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioruby
> >
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