[BioRuby] Aptana JRuby BioRuby Test
Raoul Jean Pierre Bonnal
raoul.bonnal at itb.cnr.it
Thu Mar 27 16:04:59 UTC 2008
Hello Guys,
this is a the result of running bioruby tests using Aptana Studio build:
1.1.5.009212, Rad Rails 1.0 and JRuby ruby 1.8.6 (2008-02-22 rev 5944)
[i386-jruby1.1RC2].
I did the test on branch Biohackathon2008 :-)
Loaded suite .
Started
..............ID AJ224122; SV 3; linear; genomic DNA; STD; PLN; 3827
BP.
XX
AC AJ224122;
XX
DT 27-FEB-1998 (Rel. 54, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 6)
XX
DE Arabidopsis thaliana DAG1 gene
XX
KW BBFa gene; transcription factor.
XX
OS Arabidopsis thaliana (thale cress)
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
rosids;
OC eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
XX
FH Key Location/Qualifiers
FH
XX
SQ Sequence 3827 BP; 1216 A; 1328 T; 693 C; 590 G; 0 other;
aattaaaacg ccacgcaagg cgattctagg aaatcaaaac gacacgaaat gtggggtggg
60
tgtttgggta ggaaagacag ttgtcaacat cagggatttg gattgaatca aaaaaaaagt
120
ccttagattt cataaaagct aatcacgcct caaaactggg gcctatctct tcttttttgt
180
cgcttcctgt cggtccttct ctatttcttc tccaacccct catttttgaa tatttacata
240
acaaaccgtt ttactttctt tggtcaaaat tagacccaaa attctatatt agtttaagat
300
atgtggtctg taatttattg ttgtattgat ataaaaatta gttataagcg attatatttt
360
tatgctcaag taactggtgt tagttaacta tattccacca cgataacctg attacataaa
420
atatgatttt aatcatttta gtaaaccata tcgcacgttg gatgattaat tttaacggtt
480
taataacacg tgattaaatt atttttagaa tgattattta caaacggaaa agctatatgt
540
gacacaataa ctcgtgcagt attgttagtt tgaaaagtgt atttggtttc ttatatttgg
600
cctcgatttt cagtttatgt gctttttaca aagttttatt ttcgttatct gtttaacgcg
660
acatttgttg tatggcttta ccgatttgag aataaaatca tattaccttt atgtagccat
720
gtgtggtgta atatataata atggtccttc tacgaaaaaa gcagatcaca attgaaataa
780
agggtgaaat ttggtgtccc ttttcttcgt cgaaataaca gaactaaata aaagaaagtg
840
ttatagtata ttacgtccga agaataatcc atattcctga aatacagtca acatattata
900
tatttagtac tttatataaa gttaggaatt aaatcatatg ttttatcgac catattaagt
960
cacaacttta tcataaatta atctgtaatt agaattccaa gttcgccacc gaatttcgta
1020
acctaatcta catataatag ataaaatata tatatgtaga gtaattatga tatctatgta
1080
tgtagtcatg gtatatgaat tttgaaattg gcaaggtaac attgacggat cgtaacccaa
1140
caaataatat taattacaaa atgggtgggc gggaatagta tacaactcat aattccactc
1200
actttttgta ttattaggat atgaaataag agtaatcaac atgcataata aagatgtata
1260
atttcttcat cttaaaaaac ataactacat ggtttaatac acaattttac cttttatcaa
1320
aaaagtattt cacaattcac tcgcaaatta cgaaatgatg gctagtgctt caactccaaa
1380
tttcgaatat tttaaatcac gatgtgtaga accttttatt tactggatac taatcactag
1440
tttattgagc caaccaatta gttaaataga acaatcaata ttatagccag atattttttc
1500
ctttaaaaat atttaaaaga ggggccagaa aagaaccaga gagggaggcc atgagacatt
1560
attatcacta gtcaaaaaca acaaaccctc cttttgcttt ttcatataaa ttattatatt
1620
ttattttgca ggtttcttct cttcttcttc ttcttcttct tcttcttcct cttggctgct
1680
ttctttcatc atccataaag tgaaagctaa cgcatagaga gagccatatc gtcccaaaaa
1740
aagcaaaagt ccaaaaaaaa acaactccaa aacattctct cttagctctt tactctttag
1800
tttctctctc tctctctgcc tttctctttg ttgaagttca tggatgctac gaagtggact
1860
caggtacgta aaaagatatc tctctgctat atctgtttgt ttgtagcttc tccccgactc
1920
tcacgctctc tctctctctc tctctctctt tgtgtatctc tctactcaca taaatatata
1980
catgtgtgtg tatgcatgtt tatatgtatg tatgaaacca gtagtggtta tacagatagt
2040
ctatatagag atatcaatat gatgtgtttt aatttagact ttttatatat ccgtttgaaa
2100
cttccgaagt tctcgaatgg agttaaggaa gttttgttct ctacaagttc aatttttctt
2160
gtcattaatt ataaaactct gataactaat ggataaaaaa ggtatgcttt gttagttacc
2220
ttttgttctt ggtgctcagg tcttaccatt tttttcctaa attttaatta gtctcctttc
2280
tttaattaat tttatgttaa cgcactgacg atttaacgtt aacaaaaaaa cctagattct
2340
ttttcttttc aatagagcat aattattact tcaatttcat ttatctcaca ctaaacccta
2400
atcttggcga aattcctttt atatatataa atttaattaa tttttccaca atcttggcgg
2460
aattcaggac tcggttttgc ttgttattgt tctctctttt aatttgacat ggttagggaa
2520
tacttaaagt atgtcttaat tttatagggt tttcaagaaa tgataaacgt aaagccaatg
2580
gagcaaatga tttctagcac caacaacaac acaccgcaac aacaaccaac attcatcgcc
2640
accaacacaa ggccaaacgc caccgcatcc aatggtggct ccggaggaaa taccaacaac
2700
acggctacga tggaaactag aaaggcgagg ccacaagaga aagtaaattg tccaagatgc
2760
aactcaacaa acacaaagtt ctgttattac aacaactaca gtctcacgca accaagatac
2820
ttctgcaaag gttgtcgaag gtattggacc gaaggtggct ctcttcgtaa cgtcccagtc
2880
ggaggtagct caagaaagaa caagagatcc tctacacctt tagcttcacc ttctaatccc
2940
aaacttccag atctaaaccc accgattctt ttctcaagcc aaatccctaa taagtcaaat
3000
aaagatctca acttgctatc tttcccggtc atgcaagatc atcatcatca tggtatgtct
3060
catttttttc atatgcccaa gatagagaac aacaatactt catcctcaat ctatgcttca
3120
tcatctcctg tctcagctct tgagcttcta agatccaatg gagtctcttc aagaggcatg
3180
aacacgttct tgcctggtca aatgatggat tcaaactcag tcctgtactc atctttaggg
3240
tttccaacaa tgcctgatta caaacagagt aataacaacc tttcattctc cattgatcat
3300
catcaaggga ttggacataa caccatcaac agtaaccaaa gagctcaaga taacaatgat
3360
gacatgaatg gagcaagtag ggttttgttc cctttttcag acatgaaaga gctttcaagc
3420
acaacccaag agaagagtca tggtaataat acatattgga atgggatgtt cagtaataca
3480
ggaggatctt catggtgaaa aaaggttaaa aagagctcat gaactatcag ctttcttctc
3540
tttttctgtt tttttctcct attttattat agtttttact ttgatgatct tttgtttttt
3600
ctcacatggg gaactttact taaagttgtc agaacttagt ttacagattg tctttttatt
3660
ccttctttct ggttttcctt ttttcctttt tttatcagtc tttttaaaat atgtatttca
3720
taattgggtt tgatcattca tatttattag tatcaaaata gagtctatgt tcatgaggga
3780
gtgttaaggg gtgtgagggt agaagaataa gtgaatacgg gggcccg
3827
//
................................................................................................................................................................Bio::Features is obsoleted. Some methods are added to given array to keep backward compatibility.
Bio::Features is obsoleted. Now, features are stored in an array.
Bio::Features is obsoleted. Now, features are stored in an array.
.Bio::Features is obsoleted. Some methods are added to given array to
keep backward compatibility.
.Bio::Features is obsoleted. Some methods are added to given array to
keep backward compatibility.
.Bio::Features is obsoleted. Some methods are added to given array to
keep backward compatibility.
Bio::Features is obsoleted. Now, features are stored in an array.
.....................................................Bio::References is
obsoleted. Some methods are added to given array to keep backward
compatibility.
Bio::References is obsoleted. Now, references are stored in an array.
.Bio::References is obsoleted. Some methods are added to given array to
keep backward compatibility.
......F.FFFF..F.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FFFF.................................................................................................................................................................................................................................................................................................................................................................................................................F.........................................................................................................................
Finished in 60.986000000000004 seconds.
1) Failure:
test_depth_first_search(Bio::TestSampleGraph) [test/runner.rb:10]:
timestamps wrong.
<{"v"=>[1, 6],
"w"=>[2, 5],
"x"=>[7, 10],
"y"=>[11, 16],
"z"=>[8, 9],
"q"=>[12, 15],
"r"=>[17, 20],
"s"=>[3, 4],
"t"=>[13, 14],
"u"=>[18, 19]}> expected but was
<{"q"=>[1, 16],
"s"=>[2, 7],
"v"=>[3, 6],
"w"=>[4, 5],
"t"=>[8, 15],
"x"=>[9, 12],
"z"=>[10, 11],
"y"=>[13, 14],
"r"=>[17, 20],
"u"=>[18, 19]}>.
2) Failure:
test_dump_list(Bio::TestSampleGraph) [test/runner.rb:10]:
<"v => w (1)\nw => s (1)\nx => z (1)\ny => q (1)\nz => x (1)\nq => w
(1), s (1), t (1)\nr => y (1), u (1)\ns => v (1)\nt => x (1), y (1)\nu
=> y (1)\n"> expected but was
<"q => s (1), t (1), w (1)\ns => v (1)\nt => x (1), y (1)\nw => s (1)\nr
=> u (1), y (1)\nu => y (1)\ny => q (1)\nv => w (1)\nx => z (1)\nz => x
(1)\n">.
3) Failure:
test_dump_matrix(Bio::TestSampleGraph) [test/runner.rb:10]:
<"[# v, w, x, y, z, q, r, s, t, u\n [0, 1, 0, 0, 0, 0, 0, 0, 0, 0],\n
[0, 0, 0, 0, 0, 0, 0, 1, 0, 0],\n [0, 0, 0, 0, 1, 0, 0, 0, 0, 0],\n [0,
0, 0, 0, 0, 1, 0, 0, 0, 0],\n [0, 0, 1, 0, 0, 0, 0, 0, 0, 0],\n [0, 1,
0, 0, 0, 0, 0, 1, 1, 0],\n [0, 0, 0, 1, 0, 0, 0, 0, 0, 1],\n [1, 0, 0,
0, 0, 0, 0, 0, 0, 0],\n [0, 0, 1, 1, 0, 0, 0, 0, 0, 0],\n [0, 0, 0, 1,
0, 0, 0, 0, 0, 0]\n]"> expected but was
<"[# q, s, t, w, r, u, y, v, x, z\n [0, 1, 1, 1, 0, 0, 0, 0, 0, 0],\n
[0, 0, 0, 0, 0, 0, 0, 1, 0, 0],\n [0, 0, 0, 0, 0, 0, 1, 0, 1, 0],\n [0,
1, 0, 0, 0, 0, 0, 0, 0, 0],\n [0, 0, 0, 0, 0, 1, 1, 0, 0, 0],\n [0, 0,
0, 0, 0, 0, 1, 0, 0, 0],\n [1, 0, 0, 0, 0, 0, 0, 0, 0, 0],\n [0, 0, 0,
1, 0, 0, 0, 0, 0, 0],\n [0, 0, 0, 0, 0, 0, 0, 0, 0, 1],\n [0, 0, 0, 0,
0, 0, 0, 0, 1, 0]\n]">.
4) Failure:
test_extract_subgraph_by_label(Bio::TestSampleGraph)
[test/runner.rb:10]:
<"v => w (1)\nw => s (1)\nq => w (1), s (1)\ns => v (1)\n"> expected but
was
<"q => s (1), w (1)\ns => v (1)\nw => s (1)\nv => w (1)\n">.
5) Failure:
test_extract_subgraph_by_list(Bio::TestSampleGraph) [test/runner.rb:10]:
<"x => z (1)\ny => q (1)\nz => x (1)\nq => t (1)\nt => x (1), y (1)\n">
expected but was
<"q => t (1)\nt => x (1), y (1)\ny => q (1)\nx => z (1)\nz => x (1)\n">.
6) Failure:
test_to_matrix(Bio::TestSampleGraph) [test/runner.rb:10]:
matrix wrong.
<Matrix[[0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0],
[0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0,
1, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 1, 1, 0], [0, 0, 0, 1, 0,
0, 0, 0, 0, 1], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 1, 0, 0, 0, 0,
0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0]]> expected but was
<Matrix[[0, 1, 1, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0],
[0, 0, 0, 0, 0, 0, 1, 0, 1, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0,
0, 0, 0, 1, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [1, 0, 0, 0, 0,
0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0,
0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0]]>.
7) Failure:
test_list_falsenegative(Bio::TestPROSITE) [test/runner.rb:10]:
<["P18259",
"Q13813",
"Q55593",
"Q00274",
"P54466",
"Q9HJA4",
"P55687",
"Q9W0K0",
"Q42608",
"P45873",
"P45198",
"P15828",
"P18609",
"Q51758",
"P24151",
"P23892",
"P41510",
"P22817",
"P46457",
"O15910",
"P23515",
"O59098",
"P26560",
"P26561",
"P47551",
"P22023",
"P21503",
"Q9VNB3",
"P25147",
"Q42675",
"P21524",
"P06882",
"Q61647",
"P42790",
"Q10775",
"O84877",
"P51656",
"P75548",
"Q92839",
"P51657",
"P37274",
"P34724",
"P07751",
"P00498",
"P07886",
"P26258",
"O67284",
"Q25410",
"P46724",
"P76097",
"P16086",
"P08032",
"P14198",
"P77916",
"O60779",
"P13688",
"Q03834",
"Q63912",
"O68824",
"P77932",
"Q53547",
"P77933",
"P34529",
"Q00126"]> expected but was
<["P14198",
"P13688",
"P23892",
"P51656",
"P51657",
"P77916",
"P77933",
"P77932",
"Q51758",
"Q53547",
"O68824",
"P15828",
"Q92839",
"Q61647",
"P46724",
"P45873",
"P00498",
"P75548",
"P22817",
"P25147",
"P22023",
"Q55593",
"Q25410",
"Q03834",
"P24151",
"Q9VNB3",
"P23515",
"Q63912",
"P34724",
"P37274",
"P42790",
"Q10775",
"Q42608",
"P41510",
"O84877",
"Q9HJA4",
"P21524",
"O15910",
"P46457",
"Q9W0K0",
"P08032",
"P07751",
"Q13813",
"P16086",
"P26258",
"O60779",
"P06882",
"Q42675",
"Q00126",
"P07886",
"P18609",
"P26560",
"P18259",
"P26561",
"Q00274",
"P47551",
"P55687",
"O67284",
"P21503",
"P76097",
"P45198",
"O59098",
"P34529",
"P54466"]>.
8) Failure:
test_list_falsepositive(Bio::TestPROSITE) [test/runner.rb:10]:
<["P41985",
"P41986",
"P17645",
"Q60612",
"Q60879",
"P52592",
"Q60882",
"Q60883",
"Q60884",
"Q60885",
"Q60886",
"Q60887",
"Q60888",
"Q60889",
"Q60890",
"P49218",
"Q60891",
"Q60892",
"P49220",
"Q60893",
"Q60894",
"Q60895",
"O70430",
"O70432",
"P51046",
"P51047",
"P51048",
"P51049",
"P51051",
"P51052",
"Q98913",
"Q98914",
"Q61616",
"Q61618",
"P79250",
"P14803",
"P49287",
"Q28602",
"P97267",
"Q90305",
"Q29006",
"Q95252",
"P34985",
"Q90456",
"Q95136",
"Q95137",
"Q62953",
"Q95195"]> expected but was
<["P79250",
"P97267",
"Q29006",
"Q60612",
"Q61618",
"P41985",
"P41986",
"O70430",
"O70432",
"Q95252",
"Q95136",
"Q61616",
"Q95137",
"Q95195",
"P52592",
"P51046",
"P51047",
"P51049",
"Q90456",
"P49218",
"P51048",
"P49287",
"P51051",
"P51052",
"Q62953",
"Q28602",
"P14803",
"Q60883",
"Q60890",
"Q60894",
"P34985",
"Q60882",
"Q60884",
"Q60886",
"Q60887",
"Q60888",
"Q60893",
"Q60895",
"Q60891",
"Q60879",
"Q60889",
"Q98913",
"Q60892",
"Q98914",
"Q60885",
"P17645",
"Q90305",
"P49220"]>.
9) Failure:
test_list_potentialhit(Bio::TestPROSITE) [test/runner.rb:10]:
<["P41985",
"P41986",
"P17645",
"Q60612",
"Q60879",
"P52592",
"Q60882",
"Q60883",
"Q60884",
"Q60885",
"Q60886",
"Q60887",
"Q60888",
"Q60889",
"Q60890",
"P49218",
"Q60891",
"Q60892",
"P49220",
"Q60893",
"Q60894",
"Q60895",
"O70430",
"O70432",
"P51046",
"P51047",
"P51048",
"P51049",
"P51051",
"P51052",
"Q98913",
"Q98914",
"Q61616",
"Q61618",
"P79250",
"P14803",
"P49287",
"Q28602",
"P97267",
"Q90305",
"Q29006",
"Q95252",
"P34985",
"Q90456",
"Q95136",
"Q95137",
"Q62953",
"Q95195"]> expected but was
<["P79250",
"P97267",
"Q29006",
"Q60612",
"Q61618",
"P41985",
"P41986",
"O70430",
"O70432",
"Q95252",
"Q95136",
"Q61616",
"Q95137",
"Q95195",
"P52592",
"P51046",
"P51047",
"P51049",
"Q90456",
"P49218",
"P51048",
"P49287",
"P51051",
"P51052",
"Q62953",
"Q28602",
"P14803",
"Q60883",
"Q60890",
"Q60894",
"P34985",
"Q60882",
"Q60884",
"Q60886",
"Q60887",
"Q60888",
"Q60893",
"Q60895",
"Q60891",
"Q60879",
"Q60889",
"Q98913",
"Q60892",
"Q98914",
"Q60885",
"P17645",
"Q90305",
"P49220"]>.
10) Failure:
test_list_truepositive(Bio::TestPROSITE) [test/runner.rb:10]:
<["O42427",
"P11617",
"P46090",
"P30939",
"P28336",
"Q9Z2J6",
"Q64326",
"P46092",
"P07550",
"Q9UKL2",
"P30940",
"P46093",
"Q61224",
"Q63384",
"P46094",
"Q28309",
"P22328",
"P46095",
"O77590",
"O02813",
"Q9R1C8",
"P22329",
"O93441",
"O42300",
"Q10904",
"O43613",
"Q9Z0D9",
"P18130",
"O42301",
"O43614",
"P22330",
"P22331",
"Q9GLJ8",
"O15552",
"O43193",
"P22332",
"O43194",
"Q9WV26",
"Q9TST4",
"Q62053",
"P58307",
"O42307",
"Q9TST5",
"P58308",
"Q9TST6",
"P41983",
"P30951",
"P41984",
"O02824",
"O88626",
"P91657",
"P30953",
"P18825",
"O62709",
"O42574",
"P30954",
"Q28585",
"O88628",
"P30955",
"P28221",
"Q9WU02",
"P28222",
"P32299",
"P70310",
"P28223",
"O76099",
"P04201",
"P35894",
"Q15722",
"P35895",
"O93459",
"P14416",
"P35897",
"P35898",
"P35899",
"P49578",
"O42451",
"P47745",
"Q9Y5N1",
"O42452",
"P50052",
"P47746",
"O97878",
"O02835",
"Q09502",
"Q28596",
"O00254",
"P31355",
"P47747",
"O97879",
"O02836",
"P31356",
"P30966",
"P79436",
"P47748",
"P87365",
"P08099",
"Q9JL21",
"P47749",
"P87366",
"O18481",
"P16582",
"P87367",
"P30968",
"O97880",
"P47750",
"P87368",
"Q62758",
"P30969",
"Q28468",
"O97881",
"Q09638",
"P09703",
"P87369",
"O95918",
"Q9TUE1",
"O97882",
"P22909",
"P09704",
"O18485",
"O42327",
"P47751",
"P47883",
"P18841",
"O55193",
"O97883",
"O18486",
"O42328",
"P47884",
"Q9EP86",
"O42329",
"O14626",
"P48145",
"P47887",
"O08725",
"P48146",
"P30974",
"O08858",
"O18910",
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"O54798",
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"Q9Z2I3",
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"P51677",
"P56483",
"P51678",
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"P56493",
"O62743",
"P56439",
"P51681",
"O97883",
"P79436",
"P51682",
"P56440",
"P56441",
"O97881",
"O97880",
"O97882",
"O08556",
"O97878",
"O97879",
"P51684",
"O54689",
"P32248",
"P47774",
"P51685",
"O97665",
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"P51686",
"Q9WUT7",
"P46092",
"Q9JL21",
"P35350",
"Q9NPB9",
"P51676",
"Q99788",
"P97468",
"O35786",
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"O08878",
"P46094",
"Q9R0M1",
"P35406",
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"P47800",
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"P34973",
"P20288",
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"P52703",
"P35462",
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"P19020",
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"P50130",
"O02664",
"P18901",
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"P21918",
"P25115",
"P42290",
"P42291",
"P41596",
"Q24563",
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"P21453",
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"P48303",
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"P46628",
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"P56497",
"Q90328",
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"P48302",
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"P25090",
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"O08790",
"P79242",
"P79236",
"P79178",
"P25089",
"P79191",
"P79243",
"P79237",
"P79176",
"P21462",
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"Q05394",
"P35376",
"P79763",
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"P47799",
"P23945",
"P32212",
"P35378",
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"P35379",
"P47211",
"P56479",
"Q62805",
"O43603",
"O88854",
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"O60755",
"O88853",
"O88626",
"P79266",
"P30552",
"P32239",
"P56481",
"P30796",
"P46627",
"P30553",
"Q92847",
"Q95254",
"O08725",
"P35409",
"O43193",
"O43194",
"O14843",
"O15529",
"O15552",
"Q9Y5Y4",
"Q9Z2J6",
"Q9Y2T5",
"Q15743",
"Q9TTQ9",
"Q9NYM4",
"P30731",
"P46090",
"P46089",
"P35413",
"P46093",
"P50132",
"P46095",
"P51651",
"P48145",
"P49681",
"P48146",
"P49683",
"Q64121",
"P47775",
"P35412",
"P30951",
"O18982",
"P49685",
"O97663",
"P56412",
"Q13304",
"Q14330",
"Q99678",
"Q99679",
"O00155",
"O00270",
"O75388",
"Q91178",
"Q9UPC5",
"Q9R1K6",
"Q9HC97",
"Q9ES90",
"Q93126",
"Q93127",
"P32236",
"O42329",
"O18821",
"P30968",
"Q01776",
"P49922",
"P30969",
"P32237",
"P30550",
"P21729",
"P52500",
"P35894",
"P35895",
"P34987",
"P35897",
"P35898",
"P35899",
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"P30546",
"P31389",
"P35367",
"P70174",
"P31390",
"P17124",
"P47747",
"P25021",
"P97292",
"P25102",
"Q9JI35",
"Q9Y5N1",
"P58406",
"Q9QYN8",
"Q9H3N8",
"P49019",
"P55919",
"P25024",
"P55920",
"P21109",
"P70612",
"Q28003",
"O97571",
"Q28422",
"P25025",
"Q28519",
"P35343",
"Q28807",
"P35344",
"P35407",
"Q90334",
"Q28005",
"O02721",
"Q90674",
"P22888",
"P30730",
"P16582",
"P16235",
"Q28585",
"P04201",
"P30554",
"P12526",
"P41968",
"P33033",
"P32244",
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"P32245",
"P56450",
"O97504",
"P70596",
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"P33032",
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"Q9TT23",
"Q9MZV8",
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"P41983",
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"P49285",
"P48039",
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"O76001",
"Q9NQN1",
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"Q9Y3N9",
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"O95007",
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"Q9H207",
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"P52202",
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"O42300",
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"P02699",
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"Q17292",
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"O16017",
"O18315",
"O16018",
"P32308",
"P32309",
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"Q9YGZ8",
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"O42330",
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"P28681",
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"O62791",
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"P08100",
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"P79898",
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"P79902",
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"O16005",
"P02700",
"Q9YGZ5",
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"O42466",
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"P31356",
"O62796",
"O62798",
"P29403",
"O42604",
"Q9YGY9",
"Q90215",
"P22330",
"P32311",
"Q9R024",
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"P35358",
"P04001",
"O35599",
"O18911",
"P87366",
"O18910",
"O35476",
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"P32312",
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"P34989",
"O13018",
"P51475",
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"O42266",
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"P32313",
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"O18913",
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"O14718",
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"P58307",
"O97661",
"P56718",
"Q9TUP7",
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"P58308",
"O62809",
"P56719",
"Q9Y5P1",
"Q9H255",
"O88628",
"Q9H343",
"Q9H344",
"P56449",
"P30559",
"P56494",
"P97926",
"P32306",
"P70536",
"Q28756",
"Q9UKL2",
"Q9H346",
"P41231",
"P35383",
"P41232",
"P51582",
"P32250",
"P43657",
"Q15722",
"P79928",
"Q99677",
"P48042",
"P34996",
"P47900",
"P49652",
"P49650",
"P49651",
"P21556",
"P25105",
"P35366",
"Q62035",
"P46002",
"O00254",
"P34995",
"P35375",
"P70597",
"Q9XT82",
"P43116",
"Q62053",
"Q62928",
"P35408",
"P32240",
"Q28691",
"P43114",
"P37289",
"P43088",
"P43117",
"P43118",
"Q28905",
"P79393",
"P43119",
"P43252",
"P43253",
"P11613",
"P25106",
"P56485",
"O89039",
"P23749",
"P30872",
"P30873",
"P28646",
"P34993",
"P30874",
"P30875",
"P34994",
"P30680",
"P32745",
"P30935",
"P30936",
"P31391",
"P49660",
"P30937",
"P35346",
"O08858",
"P30938",
"O42179",
"Q95125",
"P56486",
"P21731",
"P30987",
"P34978",
"Q61038",
"Q00991",
"P25116",
"P30558",
"P56488",
"P26824",
"P47749",
"P30974",
"P30975",
"O46639",
"O93603",
"P34981",
"P21761",
"Q01717",
"Q28596",
"Q27987",
"P14763",
"P16473",
"P47750",
"P21463",
"P56495",
"P16849",
"Q83207",
"O12000",
"Q9UKP6",
"P49684",
"P09703",
"P09704",
"P37288",
"Q62463",
"P30560",
"P48043",
"P47901",
"Q9WU02",
"P48974",
"Q9J529",
"P48044",
"P30518",
"P32307",
"Q00788",
"P32229",
"Q08520",
"Q19084",
"P34311",
"Q03566",
"Q09502",
"O02213",
"Q09638",
"Q09561",
"Q11082",
"Q18007",
"Q10904",
"Q18179",
"Q18904"]>.
11) Failure:
test_lite_example(Bio::TestContingencyTable) [test/runner.rb:10]:
<"2.4"> expected but was
<"2.400000000000001">.
1354 tests, 2769 assertions, 11 failures, 0 errors
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