[BioRuby] Options for ClustalW wrapper

Marc Hoeppner marc.hoeppner at molbio.su.se
Tue Jul 29 06:46:55 UTC 2008


Hi,

I am sorry if there is a good tutorial for this somewhere, but I 
couldn't find it. The API didn't help either, so here is my question:

I want to use ClustalW to create an alignment using

factory = Bio::ClustalW.new

How exactly can I pass options to ClustalW here? Like gap open penalty 
and such?

Cheers,

Marc



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