[BioRuby] Post Hackathon tasks

[Toshiaki Katayama]

Hi all,

We made web site renewal during the hackathon and it is placed at

  http://bioruby.open-bio.org/

I'll point bioruby.org to this page shortly.

All important resources are linked at the top page in the above.
For the todo list, we use 'Bug report' or 'Feature request' at the RubyForge.

We have

* Wiki docs (replaced with Media Wiki at O|B|F from our own hiki)
* API docs (RubyForge)
* ML (no change, hosted by O|B|F)
* CVS (will be replaced to SVN when BioPerl succeeded to migrate, hosted by O|B|F)
* Bug report (RubyForge)
* Feature request (RubyForge)

Regards,
Toshiaki Katayama

On 2008/02/21, at 2:03, Alex Gutteridge wrote:

> Christian: The rubyforge feature request page linked to from here:
>
> http://bioruby.open-bio.org/wiki/Bioruby_Resources
>
> Seems to be the official way to do it though it is new and there's not much there at the moment. Perhaps a 'to-do' page on the wiki itself would be helpful as well?
>
> Jan: I'll see about picking up a sequence format. Do you have anything specific in mind when you say 'webservices related stuff'? I'm working on the Moby client, though that will probably go into BioMoby rather than BioRuby. Is there a specific service we're not supporting at the moment you're thinking of?
>
> AlexG
>
> On 20 Feb 2008, at 16:21, Jan Aerts wrote:
>
>> Goto-san, Raoul and I are involved in making sure that we can
>> import/export from/to the main file and database formats such as EMBL,
>> GenBank and BioSQL. See http://hackathon.dbcls.jp/wiki/OpenBio%2A for
>> more info. Basically this involves reading such file into a
>> Bio::Sequence, exporting it and reading it in a second time. The first
>> version of the Bio::Sequence should be the same as the second one...
>>
>> As you can see in lib/bio/db, there are quite a few formats to do, so
>> any help there would be appreciated.
>>
>> And this is all completely apart from any webservices related stuff that
>> might be done...
>>
>> jan.
>>
>>
>> On Wed, 2008-02-20 at 08:05 -0800, Christian M Zmasek wrote:
>>> Same here.
>>> As I mentioned, I would be interested in seeing a feature request list
>>> from/for BioRuby users.
>>>
>>> Christian
>>>
>>>
>>> Alex Gutteridge wrote:
>>>> Hi Everybody,
>>>>
>>>> I may have missed it in my XML/SOAP/MOBY haze, but was there any
>>>> attempt to collate a to-do list for Bioruby during the hackathon? I
>>>> have some time to spare but I'd like to know a) what's most important
>>>> to work on and b) that no-one else is working on exactly the same thing.
>>>>
>>>> If nothing else I will move over the old (but still accurate I think)
>>>> Bio::PDB documentation to the new wiki and add a section on that to
>>>> the tutorial page.
>>>>
>>>> AlexG
>>>> _______________________________________________
>>>> BioRuby mailing list
>>>> BioRuby at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>>
>>>
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>> -- 
>> Dr Jan Aerts
>> Bioinformatics Group
>> Roslin Institute
>> Roslin EH25 9PS
>> Scotland, UK
>> tel: +44 131 527 4198
>>
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>
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