[BioRuby] FW: installing bio::graphics

[Francesco Strozzi]

Have you tried to remove rubygems using "apt-get remove --purge rubygems"
and install the original package?

http://rubyforge.org/frs/download.php/29548/rubygems-1.0.1.tgz

Maybe there is some issue with the package installed using apt...

Cheers

2008/2/15, jan aerts (RI) <jan.aerts at bbsrc.ac.uk>:
>
> Does this help:
> http://ericbeland.com/2007/12/20/uninitialized-constant-gem-gemrunner ?
>
>
>
> -----Original Message-----
> From: bioruby-bounces at lists.open-bio.org on behalf of Robert Citek
>
> Sent: Fri 15/02/2008 03:37
> To: bioruby at lists.open-bio.org
>
> Subject: Re: [BioRuby] FW: installing bio::graphics
>
> On Thu, Feb 14, 2008 at 7:39 PM, jan aerts (RI) <jan.aerts at bbsrc.ac.uk>
> wrote:
> > (Apparently Outlook Web Access does not automatically send back to a
> mailing list... So here you are.)
>
> Thanks.
>
> >  -----Original Message-----
> >  From: jan aerts (RI)
> >  Sent: Fri 15/02/2008 01:38
> >  To: Robert Citekt'' libyaml-ruby
> >  Subject: RE: [BioRuby] installing bio::graphics
> >
> >  Hi Robert.
> >
> >  I'm testing things out here, and all seems to work... Could you tell me
> what version of rubygems you're using ("gem --version")? If it's not 1.0.1,
> you can upgrade using "sudo gem update --system".
>
> $ gem --version
> 0.9.4
>
> $ sudo gem update --system
> ...
>
> $ gem --version
> /usr/bin/gem:23: uninitialized constant Gem::GemRunner (NameError)
>
> That does not look good.
>
> >  Then can you try the following?
> >   ruby -rubygems -e "require 'bio'; require 'bio-graphics' ; puts
> 'hello' "
>
> $ ruby -rubygems -e "require 'bio'; require 'bio-graphics' ; puts 'hello'
> "
> /usr/local/lib/site_ruby/1.8/rubygems/custom_require.rb:27:in
> `gem_original_require': no such file to load -- bio-graphics
> (LoadError)
>         from /usr/local/lib/site_ruby/1.8/rubygems/custom_require.rb:27:in
> `require'
>         from -e:1
>
> That doesn't look good, either.
>
> Back to more Googling and reading.
>
> Regards,
> - Robert
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