[BioRuby] parsing Prosite data

bio scientist pathoquest at gmail.com
Sat Apr 26 21:48:02 EDT 2008


How can we parse Prosite data using Bioruby? I am looking for a way to
populate a database table with Prosite patterns and their IDs that
correspond to a set
of genes. For example:*

**GeneID    GeneName    PrositeID       PrositePattern      Consensus**
*
1234            xyzA           PSxxxxx           KDEL
[KRHQSA]-[DENQ]-E-L

I have not yet fully grasped how parsing works. So any help and links to
resources will go a long way. Thanks.


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