[BioRuby] installing bio::graphics / cairo

[jan aerts (RI)]

Believe it or not, but I'm actually teaching at a _perl_ course for the moment... :-)

The Bio::Graphics::Panel library was written from scratch, but built on the idea's of Lincoln Stein's great Bio::Graphics module in bioperl. Bio::Graphics is _not_ part of bioruby yet, but I think that it might become in the future.

At the moment working on the possibility for vertical graphics and better integration with bioruby, so stay tuned.

j.


-----Original Message-----
From: bioruby-bounces at lists.open-bio.org on behalf of Bernd Jagla
Sent: Mon 29/10/2007 00:16
To: 'Naohisa Goto'; bioruby at lists.open-bio.org
Subject: Re: [BioRuby] installing bio::graphics / cairo
 
Indeed, this solved the problem. Now I get nice graphics with the script
from the tutorial.

Noahisa, THANKS A LOT!!!
And Jan, THANKS for the library!!!

Sone more question though, where does BioExt::Graphics::Panel come from?
The ri command doesn't seem to work from within Bioruby. I thought that with
this I could get some documentation... How are you guys staying on top of
all the functionality?

I would appreciate any tips and tricks, but I am already quite happy... ;-)

Thanks,

Bernd



|-----Original Message-----
|From: Naohisa Goto [mailto:ngoto at gen-info.osaka-u.ac.jp]
|Sent: Sunday, October 28, 2007 9:08 AM
|To: Bernd Jagla; bioruby at lists.open-bio.org
|Subject: Re: [BioRuby] installing bio::graphics / cairo
|
|Hi,
|
|Ruby-GNOME2 Win32 GUI Installer which contains rcairo-1.2.6
|will solve the problem.
|
|http://ruby-gnome2.sourceforge.jp/?News_20070212_1
|(ruby-gnome2-0.16.0-1-i386-mswin32.exe)
|
|During installation, checking "Register enviroment variables"
|option is recommended.
|
|I'm not sure, but it seems better to uninstall the cairo binaries
|you've previously been installed.
|
|
|> Hi guys,
|>
|> I guess I am having problems installing rcairo. At least that is my
|> conclusion...
|>
|> I am working on Windows XP.
|> I installed ruby and bioruby etc (see gem list output below)
|>
|> Ruby -v gives:
|> C:\ruby>ruby -v
|> ruby 1.8.6 (2007-03-13 patchlevel 0) [i386-mswin32]
|>
|> I copied the cairo libraries into the bin directory of ruby:
|> Dir bin (see below)
|
|--
|Naohisa Goto
|ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org

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