[BioRuby] EMBL parsing
Mitsuteru Nakao
n at bioruby.org
Wed May 2 16:47:27 UTC 2007
Hi Anthony,
Thank you for your bug report.
Please let me know the accession numbers of EMBL genome
files you parsed.
Thanks in advance.
Mitsuteru the Bio::EMBL maintainer.
<n at bioruby.org>
> I am having a problem when parsing EMBL genome files.
>
> embl = open(filename)
> entry = embl.gets(Bio::EMBL::DELIMITER)
> seq_obj = Bio::EMBL.new(entry)
> puts seq_obj.sequence_length
>
>
> This takes a long time (minutes) and reports a sequence_length of 0
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