[BioRuby] EMBL parsing

Anthony Underwood email2ants at gmail.com
Thu May 3 07:48:03 EDT 2007


Hi Mitsiteru,

Any of the embl files downloaded from the ebi site have this problem.

for example http://www.ebi.ac.uk/cgi-bin/dbfetch? 
db=embl&style=raw&id=CP000360

Ruby takes all of the cpu power :(


But with the equivalent file from NCBI in genbank format there is no  
problem.

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? 
cmd=Retrieve&db=Nucleotide&list_uids=94549081&dopt=GenBank

Many thanks for having a look at this


Anthony



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