[BioRuby] Is anyone parsing Nexus files?

[Naohisa Goto]

Hi,

> Hi,
> 
> I'm new to the list and haven't seen any traffic yet so this is an
> activity test as well as a query.
> 
> Is anyone on the list parsing Nexus files with Ruby? I couldn't find
> anything on the web, so I've been coding a parser myself for the last
> couple of days, so if there's anyone interested in sharing the
> effort...

In December, Nexus parser was added to the CVS repository.
It will be available in the next release.

Nexus parser:
http://code.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/*checkout*/bioruby/lib/bio/db/nexus.rb?rev=HEAD&cvsroot=bioruby&content-type=text/plain

Unit test for the Nexus parser:
http://code.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/*checkout*/bioruby/test/unit/bio/db/test_nexus.rb?rev=HEAD&cvsroot=bioruby&content-type=text/plain

Your contribution is welcomed.

Sincerely, 

Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp