[BioRuby] Subversion (Fwd: [Root-l] [Open-bio Board] OBF services)

[Topher Cyll]

Hmm, I successfully built subversion from DarwinPorts on an Intel mac
this morning.  Might be something specific to your system?

Toph



On 4/3/07, Toshiaki Katayama <ktym at hgc.jp> wrote:
> Hi,
>
> Just for notice, I'm not sure when it will happen but Trevor and O|B|F staffs are now working on migration of the BioRuby code base to subversion.
>
> I failed to install svn on my MacBook with DarwinPorts. Does anyone know how to solve this?
>
> % sudo port install subversion
> Password:
> --->  Staging zlib into destroot
> --->  Configuring libz.a
> Error: Target com.apple.destroot returned: invalid command name "command_exec"
> Error: The following dependencies failed to build: neon openssl zlib
> Error: Status 1 encountered during processing.
>
> Toshiaki
>
> Begin forwarded message:
>
> > From: Chris Dagdigian <dag at sonsorol.org>
> > Date: 2007年4月3日 4:35:57:JST
> > To: Jason Stajich <jason at bioperl.org>
> > Cc: Trevor Wennblom <trevor at umn.edu>, Pjotr Prins <pjotr2007 at thebird.nl>, Root-l Admins <root-l at open-bio.org>, Katayama Toshiaki <k at bioruby.org>, OBF Board Board <board at open-bio.org>
> > Subject: Re: [Root-l] [Open-bio Board] OBF services
> >
> > Hi folks,
> > Another update
> > I've been working via Trevor on this separately -- we've got a helpdesk ticket pending on the switchover for BioRuby.
> >
> > -Chris
> >
> > On Apr 2, 2007, at 2:32 PM, Jason Stajich wrote:
> >
> >> Hi Trevor - this got caught in our list admin, so the lack of response was due to that, apologies.
> >>
> >> SVN is available - we've done that for a few projects on a test basis and biopython is getting ready to migrate to SVN.  BioJava has talked about it for a while but it has not actually happened yet.  We would be more than happy to see this happen and can help as much as we can- although CVS to SVN migration may require some babysitting on your part.
> >>
> >> In terms of setting up Trac - I think it is possible in principle, one thing is we protect our main code repository server (dev) where there are users which have r/w access by mirroring the code repository to a separate machine which is running web services (code.open-bio.org). I am not sure how Trac will interact with this, but it should be possible.  Let's see if Chris Dagdigian (hopefully) can look into it a little and report back on what the challenges will be.
> >>
> >> -jason
> >> On Mar 15, 2007, at 10:03 AM, Trevor Wennblom wrote:
> >>
> >>> Hi guys,
> >>>
> >>> I'm a regular contributor to the BioRuby project and we're looking to
> >>> improve some of our services and interaction with the community.  My
> >>> first question is if Subversion access is available?  It would be
> >>> nice to transition from CVS to SVN sometime in the future.  Also, if
> >>> it is available, would it be possible to run a Trac instance from an
> >>> open-bio server?
> >>>
> >>> Thanks for your help,
> >>> Trevor
> >>>
> >>> ===
> >>> Trevor Wennblom <trevor at umn.edu>
> >>> Software Development
> >>> Center for Biomedical Research Informatics
> >>> University of Minnesota
> >>>
> >>>
> >>> _______________________________________________
> >>> Board mailing list
> >>> Board at lists.open-bio.org
> >>> http://lists.open-bio.org/mailman/listinfo/board
> >>
> >> --
> >> Jason Stajich
> >> Miller Research Fellow
> >> University of California, Berkeley
> >> lab: 510.642.8441
> >> http://pmb.berkeley.edu/~taylor/people/js.html
> >> http://fungalgenomes.org/
> >>
> >> _______________________________________________
> >> Root-l mailing list
> >> Root-l at lists.open-bio.org
> >> http://lists.open-bio.org/mailman/listinfo/root-l
> >
>
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