[BioRuby] fastacmd.rb: iteration

[jan aerts (RI)]

Hi,

Could someone please have a look at the each_entry method of
io/fastacmd.rb (in cvs)? The code below gives the sequences of
'id_of_entry1' and 'id_of_entry2', but the each_entry method gives no
output. Any ideas?

  fastacmd = Bio::Blast::Fastacmd.new("/path_to_my_db/db_name")
  seqs = fastacmd.fetch(['id_of_entry1','id_of_entry2'])
  seqs.each do |seq|
    puts seq                        => works fine
  end

  fastacmd.each_entry do |fasta|
    puts 'hi'                       => it never seems to get here...
  end

Thanks,
Jan Aerts, PhD
Bioinformatics Group
Roslin Institute
Roslin, Scotland, UK
+44 131 527 4200

---------The obligatory disclaimer--------
The information contained in this e-mail (including any attachments) is
confidential and is intended for the use of the addressee only.   The
opinions expressed within this e-mail (including any attachments) are
the opinions of the sender and do not necessarily constitute those of
Roslin Institute (Edinburgh) ("the Institute") unless specifically
stated by a sender who is duly authorised to do so on behalf of the
Institute.