in 'bio/alignment.rb':
###
def compact!
#(Array-like)
d = []
self.each_pair do |k, s|
if !s or s.empty?
d << k
end
end
d.each do |k|
self.delete(d)
end
d.empty? ? nil : d
end
###
should 'self.delete(d)' be 'self.delete(k)' ?