[Biopython] Infernal output parser

[Peter Cock]

Hello Samuel,

Looking back over old emails, someone once suggested including an Infernal
parser as part of Bio.SearchIO - I've not used the tool but that sounds a
sensible home. I would probably focus on the tabular output as being
simpler and more robust to parse, but if the text output is stable that
could be OK. I am wary given the history of the BLAST text output which
changed lots over the years.

Peter


On Mon, Sep 16, 2024 at 7:52 PM Samuel Prince <samuel.ed.prince at gmail.com>
wrote:

> Hello,
>
> I am writing a BioPython parser for Infernal (cmsearch and cmscan)
> standard text and tabular output. Would that be useful enough to be added
> to BioPython? Are there any specific aspects that I should know before
> contributing to this?
>
>
> Thank you,
> Samuel
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