[Biopython] Infernal output parser

[Samuel Prince]

Hello Peter,

Thank you for your feedback. I confirmed with the developer of Infernal,
and both the tabular and plain text output format are stable. The code is
ready. I will open a pull request on GitHub.


Samuel

On Tue, Sep 17, 2024 at 12:18 PM Peter Cock <p.j.a.cock at googlemail.com>
wrote:

> Hello Samuel,
>
> Looking back over old emails, someone once suggested including an Infernal
> parser as part of Bio.SearchIO - I've not used the tool but that sounds a
> sensible home. I would probably focus on the tabular output as being
> simpler and more robust to parse, but if the text output is stable that
> could be OK. I am wary given the history of the BLAST text output which
> changed lots over the years.
>
> Peter
>
>
> On Mon, Sep 16, 2024 at 7:52 PM Samuel Prince <samuel.ed.prince at gmail.com>
> wrote:
>
>> Hello,
>>
>> I am writing a BioPython parser for Infernal (cmsearch and cmscan)
>> standard text and tabular output. Would that be useful enough to be added
>> to BioPython? Are there any specific aspects that I should know before
>> contributing to this?
>>
>>
>> Thank you,
>> Samuel
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>>
>
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