[Biopython] Biopython 1.77 plans

[Peter Cock]

Excellent - the Python 2/3 cleanup work doesn't seem to have stopped yet
anyway ;)

Peter

On Thu, Jan 30, 2020 at 6:16 PM rob miller <rob.miller.gh at gmail.com> wrote:

> I'm expecting 2-3 more days before I can pass this back to João for review.
> Cheers,
> Rob.
>
>
> On Thu, Jan 30, 2020 at 2:21 AM João Rodrigues <
> j.p.g.l.m.rodrigues at gmail.com> wrote:
>
>> Yes. I'd say go for the release and if they are ready or near-ready by
>> then, we include them. Just wanted to mention them since it's been quite a
>> lot of work on Rob's part to integrate his work in Biopython.
>>
>> Peter Cock <p.j.a.cock at googlemail.com> escreveu no dia quarta,
>> 29/01/2020 à(s) 15:08:
>>
>>> You mean these?
>>>
>>> https://github.com/biopython/biopython/pull/2399
>>> https://github.com/biopython/biopython/pull/2400
>>>
>>> If they're ready soon, then sure.
>>>
>>> Peter
>>>
>>> On Wed, Jan 29, 2020 at 11:01 PM João Rodrigues <
>>> j.p.g.l.m.rodrigues at gmail.com> wrote:
>>>
>>>> Hi Peter,
>>>>
>>>> If there's time, it would be nice to merge Rob Miller's internal
>>>> coordinate code, but we can also leave it for the next release otherwise.
>>>>
>>>> Cheers,
>>>>
>>>> João
>>>>
>>>> Peter Cock <p.j.a.cock at googlemail.com> escreveu no dia quarta,
>>>> 29/01/2020 à(s) 07:58:
>>>>
>>>>> Hello all,
>>>>>
>>>>> We have indeed done a *lot* of Python 2 cleanup over December and into
>>>>> January 2020, and finished applying black to all of Biopython except
>>>>> the
>>>>> tests.
>>>>>
>>>>> There is still some more of this maintenance work on going, but I think
>>>>> my proposal aiming to release the Python 3 only Biopython 1.77 in early
>>>>> February 2020 is still sensible.
>>>>>
>>>>> Again, are there any new things people are working on, or important bug
>>>>> fixes we should wait for?
>>>>>
>>>>> Thank you,
>>>>>
>>>>> Peter
>>>>>
>>>>> On Tue, Jan 7, 2020 at 4:14 PM Peter Cock <p.j.a.cock at googlemail.com>
>>>>> wrote:
>>>>>
>>>>>> Dear Biopytoneers,
>>>>>>
>>>>>> Biopython 1.76 released 20 December 2019 was our last release to
>>>>>> support Python 2, although surprisingly the same day it was announced
>>>>>> that Python 2.7 got a last minute support extension until April 2020:
>>>>>>
>>>>>> https://www.python.org/psf/press-release/pr20191220/
>>>>>>
>>>>>> Since then we've been busy removing legacy code and workarounds needed
>>>>>> for Python 2 in Biopython, focussed on supporting Python 3.6 or later
>>>>>> only. At the current rate, we'll have finished the bulk of that work
>>>>>> later this month.
>>>>>>
>>>>>> Another milestone in sight is adoption of the black style for our
>>>>>> source code (although the tests will take a while longer).
>>>>>>
>>>>>> https://github.com/psf/black
>>>>>>
>>>>>> While neither of these goals in themselves adds any new functionality,
>>>>>> I think that would be a good point to release Biopython 1.77 - perhaps
>>>>>> early February 2020?
>>>>>>
>>>>>> Are there any other new things people are working on, or important bug
>>>>>> fixes we should wait for?
>>>>>>
>>>>>> Peter
>>>>>>
>>>>> _______________________________________________
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>>>>> https://mailman.open-bio.org/mailman/listinfo/biopython
>>>>
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>
>
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