[Biopython] EMBL DNA records with locations referencing other sequences
Peter Cock
p.j.a.cock at googlemail.com
Fri Oct 4 16:12:46 UTC 2019
That's more or less exactly what I had in mind. Do you have this on a
branch of a public git repository?
One tweak I was considering is accepting a dictionary-like object where
the values could be SeqRecord rather than Seq-like objects. The reason
being that those are easy to get via Bio.SeqIO.index(...) or
Bio.SeqIO.index_db(...), and should be perfect for when you have already
downloaded the referenced accessions (e.g. a folder of GenBank files).
Peter
On Fri, Oct 4, 2019 at 4:34 PM Adam Sjøgren <asjo at koldfront.dk> wrote:
>
> Adam writes:
>
> > If the location refers to other records, those records can be supplied
> > in an optional references dictionary, where the records will be looked
> > up by the ref (key) and the value is expected to be the same as the
> ↑
> type
> > parent_sequence parameter.
>
>
> --
> "You make a hit by putting two flops together" Adam Sjøgren
> asjo at koldfront.dk
>
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