[Biopython] HiC - extracting scaffold names from a contact matrix

Mic mictadlo at gmail.com
Fri Jan 11 03:46:29 UTC 2019


Hello,
I ran 3d-dna and ALLHiC. Both of them showing in JuiceBox (
https://www.youtube.com/watch?v=Nj7RhQZHM18 ) different chromosome size
bins (blue). Is there a way to extract scaffold names (green box ) inside
each blue box as shown here ( https://imgur.com/a/izTbb54 ) ?

Thank you in advance

Mic
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