[Biopython] Mining the PDB header

Ahmad Abdelzaher underoath006 at gmail.com
Thu May 11 17:49:29 UTC 2017


I'm not trying to mine the actual header. I would definitely be
interested in an option that retrieves the protein classification
without having to write any additional code. Does such option exist?

Regards.

On Thu, May 11, 2017 at 7:06 AM, João Rodrigues
<j.p.g.l.m.rodrigues at gmail.com> wrote:
> You can do *some* mining. Look at parse_pdb_header.
>
> 2017-05-10 18:58 GMT-07:00 Ahmad Abdelzaher <underoath006 at gmail.com>:
>>
>> Hey guys,
>>
>> Unfortunately  I read this in the FAQ page:
>>
>> " If you are interested in data mining the PDB header, you might want
>> to look elsewhere because there is only limited support for this."
>>
>> So if I can't do it with biopython, what other alternatives do I have?
>> I'm doing some PDB mining and I'm interested to retrieve the
>> classification of the structure, to do some clustering analysis later.
>>
>> Cheers.
>> _______________________________________________
>> Biopython mailing list  -  Biopython at mailman.open-bio.org
>> http://mailman.open-bio.org/mailman/listinfo/biopython
>
>



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