[Biopython] Restriction Batch Error, Python3.5 Biopython 1.7 Jupyter notebook

[Sean Brimer]

Alright, So I have gotten it to work, I had to do 'from Bio.Restriction
import *' I know its not the best way to import a module but it worked. So
now I have a follow up question.

I would like to capture the output of the restriction batch result and use
it to look for a match from another table. The result looks like a
dictionary however when I do the following I'm denied.

----> 1 ana['MluI']
TypeError: 'Analysis' object is not subscriptable


Am I wrong about this class?


On Tue, Aug 22, 2017 at 3:11 PM Sean Brimer <skbrimer at gmail.com> wrote:

> Hi All,
>
> I'm having issue with the RestrictionBatch class, when I tried to create
> it I get the following error
>
> rb = RestrictionBatch([MluI,HincII,SacII])
> ---------------------------------------------------------------------------
> NameError                                 Traceback (most recent call last)
> <ipython-input-11-90ba40b69f00> in <module>()
>       1 # rb stands for restriction batch
> ----> 2 rb = RestrictionBatch([MluI,HincII,SacII])
>
> NameError: name 'RestrictionBatch' is not defined
>
> I'm not sure how you would define this class, I am following the cookbook
> but not having much luck.
>
> Any advice is welcomed and thank you,
>
> Sean
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/biopython/attachments/20170822/a41f4ef0/attachment.html>