[Biopython] Errors with retrieval from Entrez
David Martin (Staff)
d.m.a.martin at dundee.ac.uk
Wed Nov 2 08:57:24 UTC 2016
I'm trying to retrieve a sequence from NCBI and am getting incomplete reads. Any hints or tips?
..d
handle= Entrez.efetch(db="nuccore", id=gi, retmode='text', rettype='gb')
seq= handle.read()
Traceback (most recent call last):
File "<ipython-input-11-f879be0f80fe>", line 2, in <module>
seq= handle.read()
File "C:\Anaconda3\lib\http\client.py", line 440, in read
return self._readall_chunked()
File "C:\Anaconda3\lib\http\client.py", line 550, in _readall_chunked
raise IncompleteRead(b''.join(value))
IncompleteRead: IncompleteRead(6841762 bytes read)
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