[Biopython] module SearchIO status

[Peter Cock]

Hi Bertrand,

I don't think we're expecting any major changes to the API,
although perhaps nucleotide-vs-protein and codon alignments
might be one area where that is more likely.

Bow - are you comfortable with removing the experimental
warning for SearchIO yet? As I recall there was a couple of
recent HMMER 3.1 beta output changes you were looking at...

Peter


On Mon, Oct 12, 2015 at 10:21 AM, Bertrand Neron <bneron at pasteur.fr> wrote:
> Hello,
>
> I use in one script the SearchIO module to parse 'hmmer3-text',
> it works well, but I have the following message.
>
> "Bio.SearchIO is an experimental submodule which may undergo
> significant changes prior to its future official release."
>
> I'd like to release my script, so what is exactly the status
> of this module, and it's future?
>
> Thank you
>
> Bertrand
>
> --
> Bertrand Néron
> Software Engineer
> Center of Informatics for Biology
> (http://www.pasteur.fr/en/research/center-informatics-biology)
>
> Institut Pasteur
> 28, Rue du Dr Roux
> 75724 Paris cedex 15
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