[Biopython] Fst calculation

[Tiago Antao]

Hi,

You need to install Genepop.
As far as I know, Plink does not compute Fst (but vcftools does). If
you do it with VCFtools, be mindful of the filtering.

On Tue, 10 Mar 2015 11:46:46 +0000
Tommy Carstensen <tommy.carstensen at gmail.com> wrote:

> Is it possible to calculate Fst with Biopython without installing the
> Genepop module? I want to avoid too many module dependencies.
> Otherwise I'll just do a vcftools or plink subprocess instead or write
> the code myself. Thanks.
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