[Biopython] creating simple genome database

[Peter Cock]

BioSQL was really designed around the GenBank/EMBL style
annotation files - and has wrappers from BioPerl, Biopython, etc.
That might work for you? http://biosql.org


Peter

On Fri, Jul 10, 2015 at 9:46 AM, Karin Lagesen
<karin.lagesen at medisin.uio.no> wrote:
> Hi!
>
> I am in need of creating a simple genomics database, basically one that
> contains the information found in a genbank record. However, I need one that
> contains info for multiple genomes, and thus I need several tables, an
> organism table, a feature table, etc. I have been looking around for
> something like this, because I couldn't imagine that this wasn't already a
> solved problem. I imagined that this would be useful for loads of
> researchers out there. However, nothing found yet.
>
> Hence this email. Do any of you know of something like this already
> existing, or if not, do you have any suggestions for how I go about making
> my own?
>
> Thanks a lot in advance,
>
> Karin
>
> --
> Karin Lagesen, PhD
> Institute of Informatics
> University of Oslo
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