[Biopython] pythonic way to generate tree-of-life graphics à la http://itol.embl.de ?

[Alan]

Many thanks!

Alan

On 24 February 2015 at 14:48, Denis Puthier <denis.puthier at univ-amu.fr>
wrote:

> Perhaps you could give a try at GraphLan which seems to be written in
> python.
> http://huttenhower.sph.harvard.edu/graphlan
> Best
>
> Denis
>
> 2015-02-24 15:36 GMT+01:00 Alan <alanwilter at gmail.com>:
>
>> Hi there,
>>
>> http://itol.embl.de/ is nice but not practical for me anymore.
>>
>> I am wondering if there are python tools/scripts that could help me to
>> achieve similar results.
>>
>> To start, I basically have 2 sets of taxons: one at phyla level and
>> another at species level and I just want a kind of histogram of species per
>> phylum as seen in e.g. http://itol.embl.de/shared/awss. Then I will
>> extend it for including other data.
>>
>> Many thanks in advance,
>>
>> Alan
>>
>> --
>> Alan Wilter SOUSA da SILVA, DSc
>> Bioinformatician, UniProt
>> European Bioinformatics Institute (EMBL-EBI)
>> European Molecular Biology Laboratory
>> Wellcome Trust Genome Campus
>> Hinxton
>> Cambridge CB10 1SD
>> United Kingdom
>> Tel: +44 (0)1223 494588
>>
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>>
>
>
>
> --
> ====================================================================
> Denis Puthier
> laboratoire INSERM
> TAGC/INSERM U 1090
> Parc Scientifique de Luminy case 928
> 163, avenue de Luminy
> 13288 MARSEILLE cedex 09
> FRANCE
> Mail: denis.puthier at univ-amu.fr
> Tel: (National) 04 91 82 87 11 / (International) 33 4 91 82 87 11
> Fax: (National) 04 91 82 87 01 / (International) 33 4 91 82 87 01
>
> Web:
>
>
> http://tagc.univ-mrs.fr/tagc/index.php/research/network-bioinformatics/dputhier
>
>
>
> ====================================================================
>
>


-- 
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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