[Biopython] pythonic way to generate tree-of-life graphics à la http://itol.embl.de ?

Alan alanwilter at gmail.com
Tue Feb 24 14:36:47 UTC 2015


Hi there,

http://itol.embl.de/ is nice but not practical for me anymore.

I am wondering if there are python tools/scripts that could help me to
achieve similar results.

To start, I basically have 2 sets of taxons: one at phyla level and another
at species level and I just want a kind of histogram of species per phylum
as seen in e.g. http://itol.embl.de/shared/awss. Then I will extend it for
including other data.

Many thanks in advance,

Alan

-- 
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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