[Biopython] Extracting a PDB list

[Téletchéa Stéphane]

Le 10/02/2015 22:35, PC a écrit :
> Hi,
>
> I do know about PISCES lists but I want a list of PDB's without any chain breaks.
>
> Is there such a list or a way to obtain such a list?
>
> Thank you.

Something as simple as :
1 - grep 'MISSING RESIDUES' *.pdb ?
2 - reverse the list ...

For instance in many pdb files you will get a line "REMARK 465 MISSING 
RESIDUES"...

See more here -> http://www.wwpdb.org/documentation/procedure.php#toc_9

Of course this is a rough approach, but using bio.PDB to extract chains 
and searching for missing residues in this
chain will certainly get most of the job done :-)

Best,

Stéphane

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