[Biopython] Understanding pdb biopython

Sanjeev Sariya s.sariya_work at ymail.com
Fri Oct 24 18:10:56 UTC 2014


Hi All,I'm having a hard time using and understanding biopython pdb../read_pdb_file.py 3OE6.pdb
I'm attaching python script, pdb file, fasta file and output with mail.I'have following doubts:- When I print the sequence I get in broken pieces. Why?- Also the sequence printed doesn't match with the fasta file (attached).- Am I doing making a silly mistake?
I am running script as:
python read_pdb_file.py 3OE6.pdb 
Kindly help and guide.

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