[Biopython] Retrieving protein transcripts for a protein coding gene

Kenan Azam azam.kenan at gmail.com
Mon Jul 7 18:07:36 UTC 2014


Hi there,

I am using biopython's wrapper API for ncbi eutils to retrieve related
proteins, identical proteins and variant proteins (transcripts, splice
variants, etc) for a certain protein coding gene.

This information is displayed for a protein coding gene on its ncbi page
under the "mRNA and Protein(s)" section

http://www.ncbi.nlm.nih.gov/gene/10555

I am retrieving identical proteins via LinkName=protein_protein_identical
and related via LinkName=protein_protein

http://www.ncbi.nlm.nih.gov/protein?LinkName=protein_protein_identical&from_uid=69122971

Is there a way to retrieve the transcripts for a protein coding gene?

Thank you, K
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