[Biopython] Google Summer of Code 2014 - Call for project ideas

[Saket Choudhary]

Hi Kevin,

In fact I had forked this long ago[1], didn't have time to contribute
it to though.

Thanks for the awesome work!

[1] https://github.com/saketkc/pyNGSQC

Saket

On 4 February 2014 12:16, Kevin Murray <kevin at kdmurray.id.au> wrote:
> Saket,
>
> Apologies in advance if this is a little too unsolicited! =)
>
> Feel free to use pyNGSQC[1] as the basis for some of the proposed QC
> stuff, if it is of any use. I've been meaning to refactor this to use
> Biopython and in the long term submit a pull request, but I doubt I'll
> have time. I can share the refactoring progress with you/push it to
> github if you're interested.
>
> [1]: https://github.com/kdmurray91/pyNGSQC
>
>
> Cheers,
>
> Kevin
>
> On Mon, 3 Feb 2014 09:52:42 +0530
> Saket Choudhary <saketkc at gmail.com> wrote:
>
>>On 31 January 2014 16:25, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>>> On Wed, Jan 29, 2014 at 9:29 PM, Eric Talevich
>>> <eric.talevich at gmail.com> wrote:
>>>> Hi folks,
>>>>
>>>> Google Summer of Code is on again for 2014, and the Open
>>>> Bioinformatics Foundation (OBF) is once again applying as a
>>>> mentoring organization. Participating in GSoC as an organization is
>>>> very competitive, and we will need your help in gathering a good
>>>> set of ideas and potential mentors for Biopython's role in GSoC
>>>> this year.
>>>>
>>>> If you have an idea for a Summer of Code project, please post your
>>>> idea here on the Biopython mailing list for discussion and start an
>>>> outline on this wiki page:
>>>> http://biopython.org/wiki/Google_Summer_of_Code
>>>>
>>>> We also welcome ideas that fit with OBF's mission but are not part
>>>> of a single Bio* project, or span multiple projects -- these ideas
>>>> can be posted on the OBF wiki and discussed on the OBF mailing list:
>>>> http://www.open-bio.org/wiki/Google_Summer_of_Code#Project_ideas
>>>> http://lists.open-bio.org/mailman/listinfo/open-bio-l
>>>>
>>>> Here's to another fun and productive Summer of Code!
>>>>
>>>> Cheers,
>>>> Eric & Raoul
>>>
>>> Thanks Eric & Raoul,
>>>
>>> Remember that the ideas don't have to come from potential mentors -
>>> if as a student there is something you'd particularly like to work on
>>> please ask, and perhaps we can find a suitable (Biopython) mentor.
>>>
>>> Regards,
>>>
>>> Peter
>>
>>I would like to propose a QC module for NGS & Microarray data.
>>Essentially a fastQC[1] and limma[2], respectively ported to
>>Biopython.
>>
>>
>>
>>[1] http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
>>[2] http://bioconductor.org/packages/devel/bioc/html/limma.html
>>
>>
>>Saket
>>
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