[Biopython] SVDSuperimposer()

[George Devaniranjan]

I was wondering if there is a faster way to do the following.


I am minimizing a protein structure and one of the 'measurements" is that
the minimized structure be as close to the starting value as possible.


Currently I use SVDSuperimposer.SVDSuperimposer() to calculate the RMSD
difference.


When I checked the various "energy terms" that are used to evaluate the
structure I find that the bottleneck is
indeed SVDSuperimposer.SVDSuperimposer().


Is there a way to do this more efficiently ?


Thank you