[Biopython] codon bias

[Jessica Grant]

Hello again,

I am resending to clarify - I am wondering if anyone has
implemented  Wright's Effective Number of Codons (as in Wright, F. 1990.
The effective number of codons used in a gene. Gene 87:23-29), or any
improved method.  I have tried using codonW but got some wonky results.  I
am working with transcriptome data from a non-model organism and want to
look at the relationships between ENc, GC3 and other statistics to tease
out any information about the data in my transcriptome.

Thanks,

Jessica

On Fri, Oct 25, 2013 at 1:44 PM, Jessica Grant <jgrant at smith.edu> wrote:

> Hello,
>
> I was wondering if anyone had some code to determine effective number of
> codons in a sequence.  I'm working with an organism with a non-canonical
> genetic code, so I don't think I can use any of the standard packages.
>
> Thanks,
>
> Jessica
>
>
>